ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10180-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCGCCATATCTCTCCGCCGTC miRNA* CGGTGGTGACATAATGGTGGAGA mismatches: 3 bulges: 1 |
pre-miRNA
GATGGCTTTTGACGGTGGTGACATAATGGTGGAGAATGATTTGATACAGAGTGTTGGTGTTTCGCCGCGTCGGATTGACCTGAAATTCGCCGTCGATGAG
AATTTTAGAGCTCGGCCGACGACTGACTCCATCAACGCCGCCATATCTCTCCGCCGTCAAACTCTCTC
dot-bracket secondary structure
((.((..(((((((((((.((.(((.((((((.......((((...))))..(((((((..(((...((((((.((((((((((((((...........)
)))))))).).))))))))))..)))...))))))).))))))))).)).)))))))))))..)).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
GATGGCTTTTGACGGTGGTGACATAATGGTGGAGAATGATTTGATACAGAGTGTTGGTGTTTCGCCGCGTCGGATTGACCTGAAATTCGCCGTCGATGAG
AATTTTAGAGCTCGGCCGACGACTGACTCCATCAACGCCGCCATATCTCTCCGCCGTCAAACTCTCTC
dot-bracket secondary structure
((.((..(((((((((((.((.(((.((((((.......((((...))))..(((((((..(((...((((((.((((((((((((((...........)
)))))))).).))))))))))..)))...))))))).))))))))).)).)))))))))))..)).))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q8LCU7|MECR_ARATH: 2e-19 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
