ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10192-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGACCTGGGGGTCGAGTGGT miRNA* CACTCGACCTCGGGGTCGAGTG mismatches: 2 bulges: 0 |
pre-miRNA
GTGAAGACACTCGACCTCGGGGTCGAGTGAGGTGATCGAGTGATGGTCAGGTGATGGAGATGAAGACATTCTACCTCGTGGTCGAGTGGTGAGGTGAAGT
GGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGGTCTGCTGAGGTTGTGAAGCGTCTACTCGACCTGGGGGTCGAGTGGTTTTGC
dot-bracket secondary structure
(..(((.(((((((((((.(((((((((((.((.((((..((.....))..))))..((....((((((((.(((((.(((((((((((.((.((.(...
..).)).))..))))))))))).))))).)))).)))).))...........)).)).))))))))).))))))))))).)))..)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GTGAAGACACTCGACCTCGGGGTCGAGTGAGGTGATCGAGTGATGGTCAGGTGATGGAGATGAAGACATTCTACCTCGTGGTCGAGTGGTGAGGTGAAGT
GGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGGTCTGCTGAGGTTGTGAAGCGTCTACTCGACCTGGGGGTCGAGTGGTTTTGC
dot-bracket secondary structure
(..(((.(((((((((((.(((((((((((.((.((((..((.....))..))))..((....((((((((.(((((.(((((((((((.((.((.(...
..).)).))..))))))))))).))))).)))).)))).))...........)).)).))))))))).))))))))))).)))..)
SIMILARITIES| miRBase no hits PMRD ath-miRf10191-akr: 5e-103 microPC no hits | UniProt no hits RFAM MIR854: 0.0000000007 |
Identical with: ath-miRf10191-akr from PMRD (MNEST047291) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
