ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10210-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGACCAAGGGGTCGAGTGGT miRNA* TACTCGGCCAGGTGGTCGAGTG mismatches: 4 bulges: 0 |
pre-miRNA
CTCATGGTGGTACTCGGCCAGGTGGTCGAGTGGTGAGGTGAATTGATGAAGTCTTCTTCTCGACCAAGGGGTCGAGTGGTCTCTTGAG
dot-bracket secondary structure
((((.(..(.(((((((((...((((((((....((((..............))))..))))))))...))))))))).)..).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CTCATGGTGGTACTCGGCCAGGTGGTCGAGTGGTGAGGTGAATTGATGAAGTCTTCTTCTCGACCAAGGGGTCGAGTGGTCTCTTGAG
dot-bracket secondary structure
((((.(..(.(((((((((...((((((((....((((..............))))..))))))))...))))))))).)..).))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10076-akr: 6e-36 microPC no hits | UniProt no hits RFAM MIR854: 0.00000008 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
