ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10215-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCTCTGGGTCGAGTG miRNA* CTCGACCTGGGGGTCGAGTGGT mismatches: 3 bulges: 0 |
pre-miRNA
GTGATGTCTTCTACTCGACCTGGGGGTCGAGTGGTCGAGTGGTGAGGTGAAGTTGTGATGTCTTCTACTCGACCTGGGGGTCGAGTGGTCTCTTGAGATC
TTGAAGCTCCTACTCGACCTCTGGGTCGAGTGGTTTTGTCAT
dot-bracket secondary structure
((((((....((((((((((..((((((((((((((((((((.((.((.(.....).)).))..)))))))))).((((.(((((..((((....)))))
))))..)))).))))))))))..))))))))))...))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GTGATGTCTTCTACTCGACCTGGGGGTCGAGTGGTCGAGTGGTGAGGTGAAGTTGTGATGTCTTCTACTCGACCTGGGGGTCGAGTGGTCTCTTGAGATC
TTGAAGCTCCTACTCGACCTCTGGGTCGAGTGGTTTTGTCAT
dot-bracket secondary structure
((((((....((((((((((..((((((((((((((((((((.((.((.(.....).)).))..)))))))))).((((.(((((..((((....)))))
))))..)))).))))))))))..))))))))))...))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10217-akr: 5e-53 microPC no hits | UniProt no hits RFAM MIR854: 0.0000005 |
Identical with: ath-miRf11064-akr from PMRD (MNEST048164) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
