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ABOUT THIS RECORD
ID:
MNEST047317
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf10217-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTACTCGACCGCTGGGTCGAGTGGT
miRNA*
CACTCGACCTCGTGGTCGAGTGATG
mismatches:
3
bulges:
0
View larger
pre-miRNA
GGTGAAGA
CACTCGACCTCGTGGTCGAGTGATG
TGATCGAGTGATGGTCAGGTGATGGAGATGAAGACGCTCGACCTCGTGGTCGAGTCGTGAGGTGAAG
TTGTGATGTCTTCTACTCGACCTGGGGGTCGAGTGGTCTCTTGAGATCTTGAAGCTC
CTACTCGACCGCTGGGTCGAGTGGT
TTTGTC
dot-bracket secondary structure
((..(((.
((((((((((.(((((((((((...
.....((((.....(((((...(.((((.((...(((((((((((..(((((((((....)..((((
.........)))).))))))))..))))))))))).)))))).)...))))).))))
.))))))))))).)))))))))).)
))..))
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10216-akr
:
4e-76
microPC
no hits
UniProt
no hits
RFAM
MIR854: 0.0002
Identical with:
ath-miRf10819-akr
from PMRD (
MNEST047919
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record