ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10218-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGACCAGGAGGTCGAGTG miRNA* CTCGACCTGGGGGTCGAGTG mismatches: 3 bulges: 0 |
pre-miRNA
TGATGGAAGTACTCGACCTGGGGGTCGAGTGGTGTGATCGAGTGATGGTCGGGTGGTGGAGATGATGATACTCGACCATGGGGTCGAGTGGTGGTGTGAA
GTGATAAGGCCTTCTACTCGACCAGGAGGTCGAGTGGTTTGTTA
dot-bracket secondary structure
(((..((..((((((((((...((((((((((.....((((.(.(((((((((((.............)))))))))))..).))))..(((..(((...
...)))..)))..))))))))))...)))))))))).))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
TGATGGAAGTACTCGACCTGGGGGTCGAGTGGTGTGATCGAGTGATGGTCGGGTGGTGGAGATGATGATACTCGACCATGGGGTCGAGTGGTGGTGTGAA
GTGATAAGGCCTTCTACTCGACCAGGAGGTCGAGTGGTTTGTTA
dot-bracket secondary structure
(((..((..((((((((((...((((((((((.....((((.(.(((((((((((.............)))))))))))..).))))..(((..(((...
...)))..)))..))))))))))...)))))))))).))..)))
SIMILARITIES| miRBase no hits PMRD ath-miRf10194-akr: 3e-39 microPC no hits | UniProt no hits RFAM MIR854: 0.0005 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
