ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10219-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCATGGGGTCGAGT miRNA* TCGACCATGGGGTCGAGTGT mismatches: 4 bulges: 0 |
pre-miRNA
ATACTCGACCATGGGGTCGAGTGGTGGTGTGAAGTGATAAGGCCTTCTACTCGACCAGGAGGTCGAGTGGTTTGTTAAAATCGCGGAGCCATCTACTCGA
CCATGGGGTCGAGTGT
dot-bracket secondary structure
((((((((((....((((((((((((((.....(((((..(((...((((((((((....))))))))))...)))...)))))...)))).))))))))
))....))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
ATACTCGACCATGGGGTCGAGTGGTGGTGTGAAGTGATAAGGCCTTCTACTCGACCAGGAGGTCGAGTGGTTTGTTAAAATCGCGGAGCCATCTACTCGA
CCATGGGGTCGAGTGT
dot-bracket secondary structure
((((((((((....((((((((((((((.....(((((..(((...((((((((((....))))))))))...)))...)))))...)))).))))))))
))....))))))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10829-akr: 2e-61 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10829-akr from PMRD (MNEST047929) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
