ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10220-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACTCGACCTCATGGTCGAGTGA miRNA* ACTCGACCACGGGGTCGAGTGAC mismatches: 2 bulges: 0 |
pre-miRNA
GGTGAAGGCACTCGACCACGGGGTCGAGTGACGTGATCGAGTGTTGGTCAGGAGATACTCGACTTCCAGGTTGAGTGAAGAGGTCGAGTGGTTGTCTGAT
GATGGAGGTGAAGACACTCGACCTCATGGTCGAGTGAAGTGATC
dot-bracket secondary structure
(((.(...((((((((((.(((((((((((...(.(((......(.((((((...(((((((((((.............)))))))))))....))))))
.)....))).)...))))))))))).))))))))))...).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
GGTGAAGGCACTCGACCACGGGGTCGAGTGACGTGATCGAGTGTTGGTCAGGAGATACTCGACTTCCAGGTTGAGTGAAGAGGTCGAGTGGTTGTCTGAT
GATGGAGGTGAAGACACTCGACCTCATGGTCGAGTGAAGTGATC
dot-bracket secondary structure
(((.(...((((((((((.(((((((((((...(.(((......(.((((((...(((((((((((.............)))))))))))....))))))
.)....))).)...))))))))))).))))))))))...).)))
SIMILARITIES| miRBase no hits PMRD ath-miRf10830-akr: 4e-78 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10830-akr from PMRD (MNEST047930) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
