ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10228-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCGACCACGAAGTCGAGT miRNA* TCGACCACTGGGTCGAGTAA mismatches: 5 bulges: 0 |
pre-miRNA
GATGACACCACTCGACCACTGGGTCGAGTAACACTTTGTCACACCACCTGACCACCACTCTGACGTTCACTCGGCCACGTTACTCGACCACGAAGTCGAG
TATCATC
dot-bracket secondary structure
(((((....(((((((.....(((((((((((.....((((.......)))).......((((.(....)))))....))))))))))).....))))))
).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
GATGACACCACTCGACCACTGGGTCGAGTAACACTTTGTCACACCACCTGACCACCACTCTGACGTTCACTCGGCCACGTTACTCGACCACGAAGTCGAG
TATCATC
dot-bracket secondary structure
(((((....(((((((.....(((((((((((.....((((.......)))).......((((.(....)))))....))))))))))).....))))))
).)))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10537-akr: 2e-54 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
