ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10238-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTACAGAGTAGTCAAGCAT miRNA* GCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 1 |
pre-miRNA
GTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGAC
dot-bracket secondary structure
(((((((.(((((.((((((((((((.((.....((((((((.......))))))))..)).))))))))))).).))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
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GTCGTGCCTGGCTCCCTGTATGCCACAAGAAAACATCGATTTAGTTTCAAAATCGATCACTAGTGGCGTACAGAGTAGTCAAGCATGAC
dot-bracket secondary structure
(((((((.(((((.((((((((((((.((.....((((((((.......))))))))..)).))))))))))).).))))).)))))))
SIMILARITIES| miRBase ath-MIR160b: 2e-45 PMRD ath-miR160b: 2e-45 microPC miR160: 0.00000000000002 | UniProt no hits RFAM mir-160: 5e-43 |
Identical with: ath-miR160b from PMRD (MNEST046935) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
