ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10239-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCCTTGCATCAACTGAATC miRNA* TTCGCTTGGTGCAGGTCGGG mismatches: 2 bulges: 0 |
pre-miRNA
TCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCC
GCCTTGCATCAACTGAATCGGATCCTCGA
dot-bracket secondary structure
(((((.((.((((((.((((((((((.(((((.((((((((((((...)))))...((.(((.((((((......)))))).))))).))))))).))))
).)))))))))).)))))).)).)).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
TCGGGCTCGGATTCGCTTGGTGCAGGTCGGGAACCAATTCGGCTGACACAGCCTCGTGACTTTTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCC
GCCTTGCATCAACTGAATCGGATCCTCGA
dot-bracket secondary structure
(((((.((.((((((.((((((((((.(((((.((((((((((((...)))))...((.(((.((((((......)))))).))))).))))))).))))
).)))))))))).)))))).)).)).)))
SIMILARITIES| miRBase ath-MIR168a: 3e-69 PMRD ath-miR168a: 3e-69 microPC miR168: 3e-54 | UniProt no hits RFAM MIR168: 6e-68 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
