ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10307-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGATACGACGGAGATGGA miRNA* CGTCTCCGCCTCGTGTTTCATC mismatches: 2 bulges: 2 |
pre-miRNA
GGAACCGTCTCCGCCTCGTGTTTCATCACGCGCCGCCGTGATTCTTCGACTACGAGGTTCATGAGTTTTCCTCCGTCTGGCTCGATCAACCCCGATTTAA
CGGAGAGGCCACGGCGGGAAACTTGACGGGGGAGAGATACGACGGAGATGGATCC
dot-bracket secondary structure
(((.(((((((((..(((((((((........((.((((((..(((((....))))).))..(((((((((.((((..((((...((....(((......
))).)))))))))).))))))))).)))).)).)))))))))))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
GGAACCGTCTCCGCCTCGTGTTTCATCACGCGCCGCCGTGATTCTTCGACTACGAGGTTCATGAGTTTTCCTCCGTCTGGCTCGATCAACCCCGATTTAA
CGGAGAGGCCACGGCGGGAAACTTGACGGGGGAGAGATACGACGGAGATGGATCC
dot-bracket secondary structure
(((.(((((((((..(((((((((........((.((((((..(((((....))))).))..(((((((((.((((..((((...((....(((......
))).)))))))))).))))))))).)))).)).)))))))))))))))))).)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9S7D8|APS4_ARATH: 6e-21 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
