ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10327-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATACTCGACCAGGGGGTCGAGTGG miRNA* ACTCGACCAGGGGGTCGAGTAACT mismatches: 5 bulges: 2 |
pre-miRNA
GTGATGATACTCGACCAGGGGGTCGAGTAACTTGGTAGAGTGAATGGCCGAGTGTGGTCAGGTGGTATGGCAAAGTGATACTCGACCAGGGGGTCGAGTG
GCATCAT
dot-bracket secondary structure
((((((.(((((((((....(((((((((((((.((..(.((..((((((....))))))..)).)...)).))))..)))))))))....)))))))))
.))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GTGATGATACTCGACCAGGGGGTCGAGTAACTTGGTAGAGTGAATGGCCGAGTGTGGTCAGGTGGTATGGCAAAGTGATACTCGACCAGGGGGTCGAGTG
GCATCAT
dot-bracket secondary structure
((((((.(((((((((....(((((((((((((.((..(.((..((((((....))))))..)).)...)).))))..)))))))))....)))))))))
.))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10939-akr: 9e-54 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10939-akr from PMRD (MNEST048039) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
