ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10414-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGGTGAAGACACTCGGCCTCG miRNA* GGGTCGAGTGATGTGATCGAGT mismatches: 6 bulges: 0 |
pre-miRNA
CACTAGACCTCGGGGTCGAGTGATGTGATCGAGTGATGGTCAGGTTGTGGAGGTGAAGACACTCGGCCTCGGGGTCAAGTG
dot-bracket secondary structure
((((.(((((((((((((((((...(.(((..(..((......))..)...))).)...))))))))))))))))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
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CACTAGACCTCGGGGTCGAGTGATGTGATCGAGTGATGGTCAGGTTGTGGAGGTGAAGACACTCGGCCTCGGGGTCAAGTG
dot-bracket secondary structure
((((.(((((((((((((((((...(.(((..(..((......))..)...))).)...))))))))))))))))).))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10413-akr: 9e-41 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10413-akr from PMRD (MNEST047513) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
