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ABOUT THIS RECORD

ID: MNEST047535
species: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10435-akr

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTCTGCCAAAGGAGATTTGC

miRNA*
GAATACTCCTATGGCAGATCG

mismatches: 2
bulges: 1

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pre-miRNA
GGATTACTGGGCGAATACTCCTATGGCAGATCGCATTGGCTAGATATGCAAGTAAAATGCTTCTCTGCCAAAGGAGATTTGCCCCGCAATTC

dot-bracket secondary structure
(((((.(.((((((((.(((((.(((((((..(((((.((.......))......)))))...))))))).))))))))))))).).)))))


SIMILARITIES
miRBase ath-MIR399d: 3e-47

PMRD ath-miR399d: 3e-47

microPC miR399: 0.000001
UniProt no hits

RFAM mir-399: 5e-46

Identical with: ath-MIR399d from miRBase (MNEST040095)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
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