ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10439-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCCAACATGGAGATTCTCACC miRNA* TGAAGAGCTCATGTTGGAGAAG mismatches: 0 bulges: 3 |
pre-miRNA
TGGGTGAAGAGCTCATGTTGGAGAAGTTAAGTACGTGCAAATAAGCAAATGAGACGGATTTCGTGTTTGTTGGTTTGCACGTGCCCTGCTTCTCCAACAT
GGAGATTCTCACCCG
dot-bracket secondary structure
.((((((.(((((((((((((((((((...((((((((((((.(((((((...(((.....)))))))))).))))))))))))...)))))))))))))
.))).))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TGGGTGAAGAGCTCATGTTGGAGAAGTTAAGTACGTGCAAATAAGCAAATGAGACGGATTTCGTGTTTGTTGGTTTGCACGTGCCCTGCTTCTCCAACAT
GGAGATTCTCACCCG
dot-bracket secondary structure
.((((((.(((((((((((((((((((...((((((((((((.(((((((...(((.....)))))))))).))))))))))))...)))))))))))))
.))).))))))))).
SIMILARITIES| miRBase ath-MIR164a: 1e-59 PMRD ath-miRf10440-akr: 1e-59 microPC miR164: 0.00002 | UniProt no hits RFAM MIR164: 2e-49 |
Identical with: ath-miR164a from PMRD (MNEST046940) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
