ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10441-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCACATCCTCTTGCTTCC miRNA* AAGCAAGATGATGTGCTTAC mismatches: 1 bulges: 0 |
pre-miRNA
CTTGTGGAGGAAGCAAGATGATGTGCTTACTTGTGGAATTTTTGTTATGTGAGTGAATACGATGAATATATTTTAAGGGCCCTATATTTCCACAACCAAG
CACATCCTCTTGCTTCCTCTCCACAAG
dot-bracket secondary structure
((((((((((((((((((.(((((((((..((((((((..((..(..(((......)))..)..)).........((....))....))))))))..)))
)))))).))))))))))..))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
CTTGTGGAGGAAGCAAGATGATGTGCTTACTTGTGGAATTTTTGTTATGTGAGTGAATACGATGAATATATTTTAAGGGCCCTATATTTCCACAACCAAG
CACATCCTCTTGCTTCCTCTCCACAAG
dot-bracket secondary structure
((((((((((((((((((.(((((((((..((((((((..((..(..(((......)))..)..)).........((....))....))))))))..)))
)))))).))))))))))..))))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf11045-akr: 5e-68 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf11045-akr from PMRD (MNEST048145) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
