ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10442-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGGCTGAAGCTGACGTGGC miRNA* CACGAGAGCTCAAGCCTCTC mismatches: 4 bulges: 0 |
pre-miRNA
CAACGCCACGAGAGCTCAAGCCTCTCTCCGACATAGACGACCAACAAGGACTAAGATTTCAAATTCCAGTTATTTTTTTCTATAGACCTAACCTTTCAAG
TGATCTTGATCCGGTCCAGGTGATAAAGAAAGCCCTCGCCGATGCGCTGGTTTACTACTATCCGTTCGCTGGTAGGCTCCGGGAACTTTCAAACCGGAAA
CTCGCGGTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGGCGCTTG
dot-bracket secondary structure
((((((((((..((((..((((((..............((((....(((.((((((....((((.......))))...))).))).)))......(((((
....)))))...))))..((((((((((...(((.((((((.(((..((((.....))))...(((((((((.((..(((((...........)))))..
))).)))))))).))).)))))).))).))))).)))))))))))..))))..))))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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CAACGCCACGAGAGCTCAAGCCTCTCTCCGACATAGACGACCAACAAGGACTAAGATTTCAAATTCCAGTTATTTTTTTCTATAGACCTAACCTTTCAAG
TGATCTTGATCCGGTCCAGGTGATAAAGAAAGCCCTCGCCGATGCGCTGGTTTACTACTATCCGTTCGCTGGTAGGCTCCGGGAACTTTCAAACCGGAAA
CTCGCGGTGGACTGCACCGGTGAAGGCGTTTTGTTCATCGAGGCTGAAGCTGACGTGGCGCTTG
dot-bracket secondary structure
((((((((((..((((..((((((..............((((....(((.((((((....((((.......))))...))).))).)))......(((((
....)))))...))))..((((((((((...(((.((((((.(((..((((.....))))...(((((((((.((..(((((...........)))))..
))).)))))))).))).)))))).))).))))).)))))))))))..))))..))))))).)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9SRQ2|CHAT_ARATH: 1e-43 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
