ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10445-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGATGATGCTGCAGCTGCA miRNA* CTGTTGGAGCATCATCAAGA mismatches: 3 bulges: 0 |
pre-miRNA
GCTACTGTTCGCTGTTGGAGCATCATCAAGATTCACAAATCATCAAGTATTCGTGTAAATAAACCCATTTATGATTAGATTTTTGATGTATGTATGAGAA
TCTTGATGATGCTGCAGCTGCAATCAGTGGC
dot-bracket secondary structure
(((((((...((.((((.((((((((((((((((.((.(((((((((...((.(((((((......)))))))....))..))))))).))...)).)))
))))))))))))).)))).))...)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
GCTACTGTTCGCTGTTGGAGCATCATCAAGATTCACAAATCATCAAGTATTCGTGTAAATAAACCCATTTATGATTAGATTTTTGATGTATGTATGAGAA
TCTTGATGATGCTGCAGCTGCAATCAGTGGC
dot-bracket secondary structure
(((((((...((.((((.((((((((((((((((.((.(((((((((...((.(((((((......)))))))....))..))))))).))...)).)))
))))))))))))).)))).))...)))))))
SIMILARITIES| miRBase ath-MIR172c: 2e-70 PMRD ath-miRf11051-akr: 2e-70 microPC miR172: 0.0000004 | UniProt no hits RFAM mir-172: 2e-64 |
Identical with: ath-MIR172c from miRBase (MNEST040065) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
