ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10453-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACTCGAACCCGAACCTGAA miRNA* CAGGTATTTTGGGTTCGAGTTTT mismatches: 1 bulges: 3 |
pre-miRNA
TCGGGTTTGGGTCAGGTATTTTGGGTTCGAGTTTTTCGGGTTTAGAAATTTAAGACCCGTTCTATATATAAATAAACCCAAACTCGAACCCGAACCTGAA
CCGAATCCGA
dot-bracket secondary structure
((((((((((.((((((...((((((((((((((...(((((((........(((.....))).........))))))))))))))))))))))))))).
))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
TCGGGTTTGGGTCAGGTATTTTGGGTTCGAGTTTTTCGGGTTTAGAAATTTAAGACCCGTTCTATATATAAATAAACCCAAACTCGAACCCGAACCTGAA
CCGAATCCGA
dot-bracket secondary structure
((((((((((.((((((...((((((((((((((...(((((((........(((.....))).........))))))))))))))))))))))))))).
))))))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10766-akr: 6e-58 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10766-akr from PMRD (MNEST047866) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
