ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10466-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCGACCTGGGGGTCGAGT miRNA* TCGACTTCCAGGTAGAGTGA mismatches: 1 bulges: 0 |
pre-miRNA
GGTGATACTCGACTTCCAGGTAGAGTGATGAGGTCGAGTAGTGGTCTGGCAATGGGATGAAGACACTCGACCTCTGGGTCGAGTGATGTGATCGAGTGGT
GGTCAGGAGATGGAGATGAAGACACTCGACCTGGTGGTCGAGTGGTGAGGTGAAGTGGTGATGTCTTCTACTCGACCTGGGGGTCGAGTGGTCTCT
dot-bracket secondary structure
((.((((((((((((((((((.((((((.((.((((.....(..(((.((.............(((((((((.(..(((((((((...(.(((......(
.(((....))).).))).)...)))))))))..).))))))))))).)))..).....)))).)).)).)))).))))))))))))))).))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GGTGATACTCGACTTCCAGGTAGAGTGATGAGGTCGAGTAGTGGTCTGGCAATGGGATGAAGACACTCGACCTCTGGGTCGAGTGATGTGATCGAGTGGT
GGTCAGGAGATGGAGATGAAGACACTCGACCTGGTGGTCGAGTGGTGAGGTGAAGTGGTGATGTCTTCTACTCGACCTGGGGGTCGAGTGGTCTCT
dot-bracket secondary structure
((.((((((((((((((((((.((((((.((.((((.....(..(((.((.............(((((((((.(..(((((((((...(.(((......(
.(((....))).).))).)...)))))))))..).))))))))))).)))..).....)))).)).)).)))).))))))))))))))).))).))
SIMILARITIES| miRBase no hits PMRD ath-miRf10589-akr: 3e-104 microPC no hits | UniProt no hits RFAM MIR854: 0.0000002 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
