ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf16
source: PMRD, original name: ath-miRf10478-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCAGGGGGTCGAGT miRNA* TCGACCAGGGGGTCGAGTGGT mismatches: 4 bulges: 0 |
pre-miRNA
GACGGGATGATACTCGACCAGGGGGTCGAGTAATGTGATCGAGTGGTAGTCCTGGTCGTACTCGACCATGTGGGTCAAGTTGTGACGTGGAGTGCTGAGG
TCTTCTACTCGACCAGGGGGTCGAGTGGTCTGTT
dot-bracket secondary structure
((((((....(((((((((....(((((((((....((((...(((((.(((..(((..(((.((((.....)))).)))...)))..))).))))).))
))...)))))))))....))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GACGGGATGATACTCGACCAGGGGGTCGAGTAATGTGATCGAGTGGTAGTCCTGGTCGTACTCGACCATGTGGGTCAAGTTGTGACGTGGAGTGCTGAGG
TCTTCTACTCGACCAGGGGGTCGAGTGGTCTGTT
dot-bracket secondary structure
((((((....(((((((((....(((((((((....((((...(((((.(((..(((..(((.((((.....)))).)))...)))..))).))))).))
))...)))))))))....))))))))).))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10735-akr: 7e-46 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
