ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10486-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACACCCTGATGCATCGATC miRNA* TCGACATGGGATGGGGTGTCAA mismatches: 2 bulges: 2 |
pre-miRNA
GCTGGGTGTTGATCGACATGGGATGGGGTGTCAATCGACACCATCTGGAATAATTTCCTTCTCCTCTGTGAAATTGTCGATTCCACTCGACAAAGGCAAA
ACAGAGTCGTCAAGAGTAATTGGTGTCGATCGACACCCTGATGCATCGATCGACACTGAGT
dot-bracket secondary structure
(((.((((((((((((..((.(.(((((((((.((((((((((...((((....)))).....((((((....(((((((......))))))).......
))))))..............)))))))))).))))))))).).)))))))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GCTGGGTGTTGATCGACATGGGATGGGGTGTCAATCGACACCATCTGGAATAATTTCCTTCTCCTCTGTGAAATTGTCGATTCCACTCGACAAAGGCAAA
ACAGAGTCGTCAAGAGTAATTGGTGTCGATCGACACCCTGATGCATCGATCGACACTGAGT
dot-bracket secondary structure
(((.((((((((((((..((.(.(((((((((.((((((((((...((((....)))).....((((((....(((((((......))))))).......
))))))..............)))))))))).))))))))).).)))))))))))))).)))
SIMILARITIES| miRBase no hits PMRD ath-miRf10411-akr: 5e-35 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
