ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10489-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTACTCGACTTGGGGGTCGAGTATG miRNA* TACTCGACCAGGGGGTCGAGTAACTT mismatches: 4 bulges: 0 |
pre-miRNA
AGTGATGATACTCGACCAGGGGGTCGAGTAACTTGGTAGAGTGAATTGTCGAGTGTGGTCAGGTGGTGTGGCGAAGTGATACTCGACCAGGGGGTCGAGT
GGCGTCATCGAGTGGCCTGAGCTGGGGATACTCGACCAGGGGGTCGAGTAGGTGGGAAGAATGGCTCCAAAGTTACTCGACTTGGGGGTCGAGTATGGTG
CT
dot-bracket secondary structure
(((.((.((((((((((...((((((((((((((....((((.(....((.(((..(((((..(((((..(((......(((((((((....))))))))
).))))))))..)))))...))).))..(((((((((....)))))))))...........).))))..))))))))))))))...)))))))))).)))
))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
AGTGATGATACTCGACCAGGGGGTCGAGTAACTTGGTAGAGTGAATTGTCGAGTGTGGTCAGGTGGTGTGGCGAAGTGATACTCGACCAGGGGGTCGAGT
GGCGTCATCGAGTGGCCTGAGCTGGGGATACTCGACCAGGGGGTCGAGTAGGTGGGAAGAATGGCTCCAAAGTTACTCGACTTGGGGGTCGAGTATGGTG
CT
dot-bracket secondary structure
(((.((.((((((((((...((((((((((((((....((((.(....((.(((..(((((..(((((..(((......(((((((((....))))))))
).))))))))..)))))...))).))..(((((((((....)))))))))...........).))))..))))))))))))))...)))))))))).)))
))
SIMILARITIES| miRBase no hits PMRD ath-miRf10037-akr: 6e-69 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10490-akr from PMRD (MNEST047590) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
