ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10490-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCAGGGGGTCGAGTGG miRNA* ACTCGACCAGGGGGTCGAGTAAC mismatches: 5 bulges: 0 |
pre-miRNA
GTGATGATACTCGACCAGGGGGTCGAGTAACTTGGTAGAGTGAATTGTCGAGTGTGGTCAGGTGGTGTGGCGAAGTGATACTCGACCAGGGGGTCGAGTG
GCGTCAT
dot-bracket secondary structure
((((((.(((((((((....(((((((((((((.((.......((..((((......)).))..))...)).))))..)))))))))....)))))))))
.))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GTGATGATACTCGACCAGGGGGTCGAGTAACTTGGTAGAGTGAATTGTCGAGTGTGGTCAGGTGGTGTGGCGAAGTGATACTCGACCAGGGGGTCGAGTG
GCGTCAT
dot-bracket secondary structure
((((((.(((((((((....(((((((((((((.((.......((..((((......)).))..))...)).))))..)))))))))....)))))))))
.))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10489-akr: 4e-56 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10489-akr from PMRD (MNEST047589) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
