ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10680-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCGCAAAATTTGCGATGGA miRNA* CGTAGCAAAGTTTGCGATGGAT mismatches: 2 bulges: 1 |
pre-miRNA
CCGCTAATGCCTCGCAAAATTTGCGATGGATTTGCGTGGCTTTTATCTGTAGTCGCAAATCCGTAGCAAAGTTTGCGATGGATTCGCGG
dot-bracket secondary structure
((((.(((.(((((((((.(((((.(((((((((((..((........))...))))))))))).))))).))))))).))))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CCGCTAATGCCTCGCAAAATTTGCGATGGATTTGCGTGGCTTTTATCTGTAGTCGCAAATCCGTAGCAAAGTTTGCGATGGATTCGCGG
dot-bracket secondary structure
((((.(((.(((((((((.(((((.(((((((((((..((........))...))))))))))).))))).))))))).))))).))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10859-akr: 4e-43 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
