ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10850-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTCTCTAGAGGAGCCAGAGCCA miRNA* GCTCTGGTTCTGCCCAGCATCAT mismatches: 5 bulges: 1 |
pre-miRNA
CTGAGGTGTCTCTAGAGGAGCCAGAGCCAAAGGAGAAATGCAGAGAGGAGTTACCAGGTCTACCAGATTTAGATTTAACACAAGAATCACTCACACGTTC
GGCTGATCCAAGAGCCGTACCCCAAAAATCAGATGACTTCAGAGATGGGTCAGCTGATACTGGATGCCTATCCGTAACTAATGAGTGTAAGCTCCTTGAT
TGGCTCTGGTTCTGCCCAGCATCATCCTCAG
dot-bracket secondary structure
((((((((...((.(.(((((((((((((((((((...((((......((((((.((((...((((.....(((((.......)))))........((.(
((((........))))).)).......(((((.(((((.((....))))))).))))).))))..))))....))))))......))))..)))))...)
)))))))))))))..).))...)).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
CTGAGGTGTCTCTAGAGGAGCCAGAGCCAAAGGAGAAATGCAGAGAGGAGTTACCAGGTCTACCAGATTTAGATTTAACACAAGAATCACTCACACGTTC
GGCTGATCCAAGAGCCGTACCCCAAAAATCAGATGACTTCAGAGATGGGTCAGCTGATACTGGATGCCTATCCGTAACTAATGAGTGTAAGCTCCTTGAT
TGGCTCTGGTTCTGCCCAGCATCATCCTCAG
dot-bracket secondary structure
((((((((...((.(.(((((((((((((((((((...((((......((((((.((((...((((.....(((((.......)))))........((.(
((((........))))).)).......(((((.(((((.((....))))))).))))).))))..))))....))))))......))))..)))))...)
)))))))))))))..).))...)).))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9SB51|UBP16_ARATH: 2e-29 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
