ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10858-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTTTTCACTGTTTGATTCGT miRNA* GAATCAAACAGTGAAAAGTGA mismatches: 0 bulges: 0 |
pre-miRNA
CAAAATAGTCACTTTTCACTGTTTGATTCGTACACTTAGATTGTACACCATTTTTAGTGTACAGATGTATATAAAAAATACACAGCGTACACTTTACATT
TGTACACTAAAAGTGATGTAATCCAAGTGTACGAATCAAACAGTGAAAAGTGACTACTTTG
dot-bracket secondary structure
((((.((((((((((((((((((((((((((((((((.(((..((((.(((((((((((((((((((((.........(((.....))).....))))))
))))))))))))))).))))))).)))))))))))))))))))))))))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
CAAAATAGTCACTTTTCACTGTTTGATTCGTACACTTAGATTGTACACCATTTTTAGTGTACAGATGTATATAAAAAATACACAGCGTACACTTTACATT
TGTACACTAAAAGTGATGTAATCCAAGTGTACGAATCAAACAGTGAAAAGTGACTACTTTG
dot-bracket secondary structure
((((.((((((((((((((((((((((((((((((((.(((..((((.(((((((((((((((((((((.........(((.....))).....))))))
))))))))))))))).))))))).)))))))))))))))))))))))))))))))).))))
SIMILARITIES| miRBase ath-MIR5014: 0.000000000000002 PMRD ath-miRf11149-akr: 4e-88 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf11149-akr from PMRD (MNEST048249) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
