ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10861-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGATGACTTGCCGGAACG miRNA* TTCTGGCAAGTTGTCCTTCG mismatches: 4 bulges: 0 |
pre-miRNA
AATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAACCATGCATATGAATAATGTGATGATTAATTATGTGATGAACATATTTCTGGCAAGTTGTCCTTC
GGCTACATT
dot-bracket secondary structure
((((.(((((((((..(((((((((((...((((...(((.(((((((.((((......)))).))))))))))))))...)))))))))))..))))).
)))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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AATGCAGCCAAGGATGACTTGCCGGAACGTTGTTAACCATGCATATGAATAATGTGATGATTAATTATGTGATGAACATATTTCTGGCAAGTTGTCCTTC
GGCTACATT
dot-bracket secondary structure
((((.(((((((((..(((((((((((...((((...(((.(((((((.((((......)))).))))))))))))))...)))))))))))..))))).
)))).))))
SIMILARITIES| miRBase aqc-MIR169c: 3e-57 PMRD ath-miRf10574-akr: 3e-57 microPC miR169: 0.00002 | UniProt no hits RFAM MIR169_2: 4e-56 |
Identical with: ath-miRf10574-akr from PMRD (MNEST047674) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
