ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10871-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTGATGTCCTTTGCTCGACC miRNA* TCGAGTGGTTTGACATGATCAGG mismatches: 5 bulges: 1 |
pre-miRNA
GAAGTGAAATGGTGATGTCCTTTGCTCGACCCGGGGGTCGAGTGGCCTCTTGAGATCTTGAAGCTCCTACTCGACCACGGGGTCGAGTGGTTTGACATGA
TCAGGTCCGCTTC
dot-bracket secondary structure
(((((((..((((.(((((..(..((((((((.(.(((((((((((.((..(....)..)).)))...)))))))).).))))))))..)...))))).)
)))..).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GAAGTGAAATGGTGATGTCCTTTGCTCGACCCGGGGGTCGAGTGGCCTCTTGAGATCTTGAAGCTCCTACTCGACCACGGGGTCGAGTGGTTTGACATGA
TCAGGTCCGCTTC
dot-bracket secondary structure
(((((((..((((.(((((..(..((((((((.(.(((((((((((.((..(....)..)).)))...)))))))).).))))))))..)...))))).)
)))..).))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10872-akr: 6e-46 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10872-akr from PMRD (MNEST047972) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
