ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10894-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCGACCACGAGGTCGAGTG miRNA* CTCAACCAGGGGGTCGAGTGTTG mismatches: 5 bulges: 0 |
pre-miRNA
GATGATGATACTCGACCACGAGGTCGAGTGGTCGTGTGAAGTGATGAGGCCTTCTACTCGACCAGGGGGTCGAGTGGTTTGTTGAAGTTGCGAAGCCATC
TACTCAACCAGGGGGTCGAGTGTTGATATCGTC
dot-bracket secondary structure
(((((((((((((((((....(((.((((((..(.((...(..((..(((...((((((((((....))))))))))...)))...))..)...)))..)
))))).)))....)))))))))))...))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GATGATGATACTCGACCACGAGGTCGAGTGGTCGTGTGAAGTGATGAGGCCTTCTACTCGACCAGGGGGTCGAGTGGTTTGTTGAAGTTGCGAAGCCATC
TACTCAACCAGGGGGTCGAGTGTTGATATCGTC
dot-bracket secondary structure
(((((((((((((((((....(((.((((((..(.((...(..((..(((...((((((((((....))))))))))...)))...))..)...)))..)
))))).)))....)))))))))))...))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10101-akr: 2e-37 microPC no hits | UniProt no hits RFAM MIR854: 0.00003 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
