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ABOUT THIS RECORD
ID:
MNEST047996
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf10896-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGAGGAGGAGTACGATACGA
miRNA*
AGCTGCTCCTCTTCTAC
mismatches:
5
bulges:
1
View larger
pre-miRNA
GGATAG
GGAGGAGGAGTACGATACGA
GCATGTATCATTTCAGTGAGCATGTACCTCCAGCGAGGGAGAGCAAGAGCTTGAGCGAAGCTCACAGAAACAAC
AGCAAGTTGCAGAAGTGGTGCAAGAAACAAGATAGGCTACTCATCAAGTGCTTCAAGGCCATCAAGTTTCTGACTGACAAGCTA
AGCTGCTCCTCTTCTA
C
C
dot-bracket secondary structure
......
((((((((((((.(.....(
((..((((((((((.((((((.....((((....))))..((((....)))).......)))))).....((((
.....))))..)))))))))).((((((..(((.((((..................)))))))..)))))).........))).
..))))))))))))).
.
.
SIMILARITIES
miRBase
ath-MIR854e
:
2e-81
PMRD
ath-miR854d
:
2e-81
microPC
no hits
UniProt
no hits
RFAM
MIR854: 3e-111
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
not a miRNA
additional data
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