ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10900-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTACTCGACCTGGTGGTCGAGTGG miRNA* ACTCGTCCTGGGGGTCGAGTATGT mismatches: 4 bulges: 1 |
pre-miRNA
GAGCTGACGTTACTCGACCTGGTGGTCGAGTGGATGGGAAGAATGGCTCCAAAGTCACTCGTCCTGGGGGTCGAGTATGTCTTCTC
dot-bracket secondary structure
(((..(((((.(((((((((...((.(((((((...(((........)))....))))))).))...))))))))))))))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GAGCTGACGTTACTCGACCTGGTGGTCGAGTGGATGGGAAGAATGGCTCCAAAGTCACTCGTCCTGGGGGTCGAGTATGTCTTCTC
dot-bracket secondary structure
(((..(((((.(((((((((...((.(((((((...(((........)))....))))))).))...))))))))))))))..)))
SIMILARITIES| miRBase no hits PMRD ath-miRf10903-akr: 1e-40 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10901-akr from PMRD (MNEST048001) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
