ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11033-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGTGGCATCATCAAGATTCA miRNA* AATCTTGATGATGCTGCATCGG mismatches: 4 bulges: 0 |
pre-miRNA
GTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGAT
GCTGCATCGGCAATCAACGAC
dot-bracket secondary structure
(((((((((((.((..(((((((((((((((.(((...(((.((((.(((((....))))).)))))))..(((.....))).))).)))))))))))))
))..)).))))...)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGATGAT
GCTGCATCGGCAATCAACGAC
dot-bracket secondary structure
(((((((((((.((..(((((((((((((((.(((...(((.((((.(((((....))))).)))))))..(((.....))).))).)))))))))))))
))..)).))))...)))))))
SIMILARITIES| miRBase aly-MIR172a: 7e-55 PMRD ath-miRf10431-akr: 2e-64 microPC miR172: 0.0000004 | UniProt no hits RFAM mir-172: 3e-60 |
Identical with: ath-MIR172a from miRBase (MNEST040063) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
