ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11043-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTGGAGCTTACCTTCGAG miRNA* CGAAGGCAAGCTTAGAG mismatches: 2 bulges: 1 |
pre-miRNA
TTCTGGAGCTTACCTTCGAGCTCTTGGACAGCGGCAGGGTCAGTGGTCATGCCGAACATGCCTTTAAAGACACGCTCGAAGGCAAGCTTAGAG
dot-bracket secondary structure
.((((.(((((.(((((((((((((((.((.(((((.(..(...)..).)))))....))))....))))...))))))))).))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TTCTGGAGCTTACCTTCGAGCTCTTGGACAGCGGCAGGGTCAGTGGTCATGCCGAACATGCCTTTAAAGACACGCTCGAAGGCAAGCTTAGAG
dot-bracket secondary structure
.((((.(((((.(((((((((((((((.((.(((((.(..(...)..).)))))....))))....))))...))))))))).))))))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q96266|GSTF6_ARATH: 0.0000000009 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
