ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11046-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCCGAAACCTGACCCG miRNA* TGAAATTCGGGTTTGGGTCCGAA mismatches: 3 bulges: 1 |
pre-miRNA
GAATATTTCGGACCCGAAACCTGACCCGCTTTGATGGGCTGGATTCCGTGTCCGTGCTGGGGAACCAACGACGATGAAAACGCCGGCGAGGTGGCGGATC
GTGATCCGGTGCTTCTAGTATCTGGAATTGGAGGCTCTATTCTGCATTCTAAGAAGAAGAATTCAAAGTCTGAAATTCGGGTTTGGGTCCGAATATTTC
dot-bracket secondary structure
(((((((.(((((((.((((((((...(((((((...(((((((..((.((((((..(((....))).............((((.....)))))))))))
)..)))))))(((((((((.......)))))))))(((.((((........))))..)))..))))))).......)))))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
GAATATTTCGGACCCGAAACCTGACCCGCTTTGATGGGCTGGATTCCGTGTCCGTGCTGGGGAACCAACGACGATGAAAACGCCGGCGAGGTGGCGGATC
GTGATCCGGTGCTTCTAGTATCTGGAATTGGAGGCTCTATTCTGCATTCTAAGAAGAAGAATTCAAAGTCTGAAATTCGGGTTTGGGTCCGAATATTTC
dot-bracket secondary structure
(((((((.(((((((.((((((((...(((((((...(((((((..((.((((((..(((....))).............((((.....)))))))))))
)..)))))))(((((((((.......)))))))))(((.((((........))))..)))..))))))).......)))))))))))))))))))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q93V61|LCAT3_ARATH: 1e-27 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
