ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11051-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCTGTTGGAGCATCATCAA miRNA* GATGATGCTGCAGCTGCAAT mismatches: 3 bulges: 0 |
pre-miRNA
AGCTACTGTTCGCTGTTGGAGCATCATCAAGATTCACAAATCATCAAGTATTCGTGTAAATAAACCCATTTATGATTAGATTTTTGATGTATGTATGAGA
ATCTTGATGATGCTGCAGCTGCAATCAGTGGCT
dot-bracket secondary structure
((((((((...((.((((.((((((((((((((((.((.(((((((((...((.(((((((......)))))))....))..))))))).))...)).))
)))))))))))))).)))).))...))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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AGCTACTGTTCGCTGTTGGAGCATCATCAAGATTCACAAATCATCAAGTATTCGTGTAAATAAACCCATTTATGATTAGATTTTTGATGTATGTATGAGA
ATCTTGATGATGCTGCAGCTGCAATCAGTGGCT
dot-bracket secondary structure
((((((((...((.((((.((((((((((((((((.((.(((((((((...((.(((((((......)))))))....))..))))))).))...)).))
)))))))))))))).)))).))...))))))))
SIMILARITIES| miRBase ath-MIR172c: 1e-71 PMRD ath-miRf10755-akr: 1e-71 microPC miR172: 0.0000004 | UniProt no hits RFAM mir-172: 2e-64 |
Identical with: ath-MIR172c from miRBase (MNEST040065) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
