ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11053-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCATCTCTTGAGGAACTTGG miRNA* TGATTGGACTCCTTTTAGAGGTGGTGAA mismatches: 4 bulges: 6 |
pre-miRNA
GAAGTACCATCTCTTGAGGAACTTGGCTACAAAGATGATGAACAAGTAAGAGGTGATCTGTTTTCTTTAGGTCGTTTAACAATTTATCCATCTGAGAATC
TTATGCTCATGTAAATGTCTGTAGGCTGATTGGACTCCTTTTAGAGGTGGTGAATC
dot-bracket secondary structure
((..((((((((((.(((((.((.(.(((((.((((((((((...((...(..(((((((.......)))))))..).))..))))).))))).......
...(((....)))......))))).).....))..)))))..))))))))))..))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
GAAGTACCATCTCTTGAGGAACTTGGCTACAAAGATGATGAACAAGTAAGAGGTGATCTGTTTTCTTTAGGTCGTTTAACAATTTATCCATCTGAGAATC
TTATGCTCATGTAAATGTCTGTAGGCTGATTGGACTCCTTTTAGAGGTGGTGAATC
dot-bracket secondary structure
((..((((((((((.(((((.((.(.(((((.((((((((((...((...(..(((((((.......)))))))..).))..))))).))))).......
...(((....)))......))))).).....))..)))))..))))))))))..))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
degradome data
download this record
