ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11063-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGATGTCCTCTACTCGACC miRNA* TCGAGTGGTTTGACATGATCA mismatches: 3 bulges: 1 |
pre-miRNA
GGTGAAGTAGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGATCTGTTGAGATCTTGAAGCTCCTACTCGACCTCGAGGTCGAGTGGTTTGACATGATC
AAGCC
dot-bracket secondary structure
(((....(.((.(((((..((((((((((..(((((((((((((((....)))))...........))))))))))..))))))))))...))))).)).
).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GGTGAAGTAGTGATGTCCTCTACTCGACCAGGGGGTCGAGTGATCTGTTGAGATCTTGAAGCTCCTACTCGACCTCGAGGTCGAGTGGTTTGACATGATC
AAGCC
dot-bracket secondary structure
(((....(.((.(((((..((((((((((..(((((((((((((((....)))))...........))))))))))..))))))))))...))))).)).
).)))
SIMILARITIES| miRBase no hits PMRD ath-miRf11120-akr: 2e-48 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
