ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11078-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCATGGGGTCGAGTAATG miRNA* TCTACTCGACTAGGTGGTCGAGTGGT mismatches: 2 bulges: 1 |
pre-miRNA
GATAATGATACTCGACCATGGGGTCGAGTAATGGTGTGAAGTGATGAGGCCATCTACTCGACTAGGTGGTCGAGTGGTGTGTT
dot-bracket secondary structure
((((....(((((((((((..((((((((((((((.(.(.....).).))))).)))))))))..)))))))))))...))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GATAATGATACTCGACCATGGGGTCGAGTAATGGTGTGAAGTGATGAGGCCATCTACTCGACTAGGTGGTCGAGTGGTGTGTT
dot-bracket secondary structure
((((....(((((((((((..((((((((((((((.(.(.....).).))))).)))))))))..)))))))))))...))))
SIMILARITIES| miRBase no hits PMRD ath-miRf11079-akr: 6e-42 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf11079-akr from PMRD (MNEST048179) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
