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ABOUT THIS RECORD
ID:
MNEST048180
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf11080-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACTCGACCCCGAGGTCGAGT
miRNA*
TCGACCACCTGGGTCGAGTAC
mismatches:
2
bulges:
1
View larger
pre-miRNA
ACTTC
ACTCGACCCCGAGGTCGAGT
GTCTTCACCTCCATTACCTGATCATCACTCGATCACACCACTCTACCTGGAAGTCGAGTATCACCATCACCACCA
CTCGACTACATACTCGATGGCGAGCTTCAGAGTCTTCTCCATTCCGCACTCAACCAGACACTCAAGCACAAGGAAGAAAAGAAGACTCCAGCTATTCACT
CGACCACACAC
TCGACCACCTGGGTCGAGTAC
AGT
dot-bracket secondary structure
(((..
(((((((((.(.((((((((
((................(((((.......)))))..(((.......)))..(((((((.............(((
.((((........)))))))..((((...(((((((((...((((..........................))))....))))))))).))))....)))
))))...))))
))))))..).)))))))))..
)))
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10788-akr
:
8e-50
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
not a miRNA
additional data
download this record