ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11085-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTCCTTTTCTCCTTCACGG miRNA* GTGAAGGAGAAAAAGACTTTCC mismatches: 1 bulges: 0 |
pre-miRNA
AGATTTGAGGAAAGTCCTTTTCTCCTTCACGGCTAGCATCATTTGTAGACTTGCTTTTGGACAAAACTTCCACCAATGCGATTTTGTTGATGCTAGCCGT
GAAGGAGAAAAAGACTTTCCTCAAATCT
dot-bracket secondary structure
((((((((((((((((.((((((((((((((((((((((((....((((.((((...((((.......)))).....)))).)))).)))))))))))))
))))))))))).))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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AGATTTGAGGAAAGTCCTTTTCTCCTTCACGGCTAGCATCATTTGTAGACTTGCTTTTGGACAAAACTTCCACCAATGCGATTTTGTTGATGCTAGCCGT
GAAGGAGAAAAAGACTTTCCTCAAATCT
dot-bracket secondary structure
((((((((((((((((.((((((((((((((((((((((((....((((.((((...((((.......)))).....)))).)))).)))))))))))))
))))))))))).))))))))))))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10793-akr: 1e-68 microPC no hits | UniProt sp|Q9LXM3|C71BZ_ARATH: 0.00000000003 RFAM no hits |
Identical with: ath-miRf10499-akr from PMRD (MNEST047599) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
