ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11086-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTGTTTGAACCTAACGAGC miRNA* TCGTTAGGTTTGAACACTAG mismatches: 2 bulges: 0 |
pre-miRNA
CGACGAACCTAGTGTTTGAACCTAACGAGCAGTACTTTGTTCCTAACCCTTCTGAGACCGTGTTAGATTAGTAGACAAGTGACAGTCTAACACTAGGTAA
CAAGGTACTGCTCGTTAGGTTTGAACACTAGGTTCGTCG
dot-bracket secondary structure
((((((((((((((((..(((((((((((((((((((((((((((...((....))...((((((((((.((.........)))))))))))))))).))
)))))))))))))))))))))..))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
CGACGAACCTAGTGTTTGAACCTAACGAGCAGTACTTTGTTCCTAACCCTTCTGAGACCGTGTTAGATTAGTAGACAAGTGACAGTCTAACACTAGGTAA
CAAGGTACTGCTCGTTAGGTTTGAACACTAGGTTCGTCG
dot-bracket secondary structure
((((((((((((((((..(((((((((((((((((((((((((((...((....))...((((((((((.((.........)))))))))))))))).))
)))))))))))))))))))))..))))))))))))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10501-akr: 1e-65 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10501-akr from PMRD (MNEST047601) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
