miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST048189
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf11089-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAAACGCAGCGTTTGCGGTT
miRNA*
CCGCAAGCGTTTGCGGTTGCG
mismatches:
3
bulges:
1
View larger
pre-miRNA
CTACCACCCG
CAAACGCAGCGTTTGCGGTT
GGTAGCGGTTGTTAGCGATTAACATCAATCATAGAAACCGCTAGATATCGCTTTAAACCGCTCGAAATCG
CCAGTTTTCAAAAGCTCCTTC
CCGCAAGCGTTTGCGGTTGCG
GGCGGTAG
dot-bracket secondary structure
(((((.((((
(((.((((((((((((((..
((.(((((((...((((((........(((.(((......))))))))))))...))))))).((((.(.
...).))))........))..
))))))))).))))).)))))
)).)))))
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10186-akr
:
1e-81
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ath-miRf10186-akr
from PMRD (
MNEST047286
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record