ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11094-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTTTTCACTGTTTGATTCGT miRNA* GAATCAAACAGTGAAAAGTGA mismatches: 0 bulges: 0 |
pre-miRNA
CAAAATAGTCACTTTTCACTGTTTGATTCGTACACTTAGTTTGTACACCACTTTTAGTGATCAGATGTATATAAAAAATACACAGCGTACACTTTACATT
TGTACAATAAAAGTGATGTACAATCCAAGTGTACGAATCAAACAGTGAAAAGTGACTACTTTG
dot-bracket secondary structure
((((.((((((((((((((((((((((((((((((((.(.(((((((.((((((((.((..((((((((.........(((.....))).....))))))
))..)).)))))))).))))))).).)))))))))))))))))))))))))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
CAAAATAGTCACTTTTCACTGTTTGATTCGTACACTTAGTTTGTACACCACTTTTAGTGATCAGATGTATATAAAAAATACACAGCGTACACTTTACATT
TGTACAATAAAAGTGATGTACAATCCAAGTGTACGAATCAAACAGTGAAAAGTGACTACTTTG
dot-bracket secondary structure
((((.((((((((((((((((((((((((((((((((.(.(((((((.((((((((.((..((((((((.........(((.....))).....))))))
))..)).)))))))).))))))).).)))))))))))))))))))))))))))))))).))))
SIMILARITIES| miRBase ath-MIR5014: 0.000000000009 PMRD ath-miRf10801-akr: 2e-89 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10801-akr from PMRD (MNEST047901) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
