ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11101-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTCTGTATCTTCGTTGTCA miRNA* ACGATGAAGACATAGAAGAGC mismatches: 2 bulges: 0 |
pre-miRNA
CTTGATTTGATCCTCTGTATCTTCGTTGTCATCACAAAGTTCGTTAATCTCTATTATCAAGTCCGTTGAAGGTCCTTAAGATATTTAAGTTTGAAGAAAT
TTGTGATGACGATGAAGACATAGAAGAGCAGATCGAG
dot-bracket secondary structure
(((((((((.((.(((((.(((((((((((((((((((.(((.((((.((..(.(((((((.((......))..)))..)))).)..)).)))).))).)
)))))))))))))))))).))))).)).)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
CTTGATTTGATCCTCTGTATCTTCGTTGTCATCACAAAGTTCGTTAATCTCTATTATCAAGTCCGTTGAAGGTCCTTAAGATATTTAAGTTTGAAGAAAT
TTGTGATGACGATGAAGACATAGAAGAGCAGATCGAG
dot-bracket secondary structure
(((((((((.((.(((((.(((((((((((((((((((.(((.((((.((..(.(((((((.((......))..)))..)))).)..)).)))).))).)
)))))))))))))))))).))))).)).)))))))))
SIMILARITIES| miRBase ath-MIR3932a: 1e-65 PMRD ath-miRf10807-akr: 1e-65 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-MIR3932a from miRBase (MNEST040229) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
