ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11103-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGTTGTATGTGAATACG miRNA* TATTCACAAGCAACTTAAGA mismatches: 1 bulges: 0 |
pre-miRNA
ACTCTAGTCTTGAGTTGTATGTGAATACGACCCACTAGAAATTGAAATAAACAAAGAAATTTCATTTTTTGTAGTCTAATTTGATGAAATTTTATACTGA
TATTGTTTCTTTGTTTCTTTCAGTTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGT
dot-bracket secondary structure
(((((.((((((((((((.(((((((((((.(((((.((((((((((.((((((((((((...(((....(((....(((((....)))))...))).))
)...)))))))))))).)))))))))).))))).))))))))))).)))))))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
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ACTCTAGTCTTGAGTTGTATGTGAATACGACCCACTAGAAATTGAAATAAACAAAGAAATTTCATTTTTTGTAGTCTAATTTGATGAAATTTTATACTGA
TATTGTTTCTTTGTTTCTTTCAGTTTCCAGTGGCTCGTATTCACAAGCAACTTAAGACCAGAGT
dot-bracket secondary structure
(((((.((((((((((((.(((((((((((.(((((.((((((((((.((((((((((((...(((....(((....(((((....)))))...))).))
)...)))))))))))).)))))))))).))))).))))))))))).)))))))))))).)))))
SIMILARITIES| miRBase ath-MIR841b: 6e-90 PMRD ath-miR841: 5e-78 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf11102-akr from PMRD (MNEST048202) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
