ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11150-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTAACGTCCTTATGAGCAATCTC miRNA* GATTGCTCATAAGGATGTTACTAT mismatches: 0 bulges: 0 |
pre-miRNA
GAAAGTAACGTCCTTATGAGCAATCTCCATTCCTCAGGCGTCGGTATAGATCCAAGTAACCCGGTGACTCTGGTCTGATTAACCTGCATAGACAAAATGG
AACAGAATGTATTGCCAAAGGGAATTGGAGATTGCTCATAAGGATGTTACTATC
dot-bracket secondary structure
((.(((((((((((((((((((((((((((((((..((((...(((((..((((........(....)....(((((...........)))))....)))
)......)))))))))...))))).)))))))))))))))))))))))))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GAAAGTAACGTCCTTATGAGCAATCTCCATTCCTCAGGCGTCGGTATAGATCCAAGTAACCCGGTGACTCTGGTCTGATTAACCTGCATAGACAAAATGG
AACAGAATGTATTGCCAAAGGGAATTGGAGATTGCTCATAAGGATGTTACTATC
dot-bracket secondary structure
((.(((((((((((((((((((((((((((((((..((((...(((((..((((........(....)....(((((...........)))))....)))
)......)))))))))...))))).)))))))))))))))))))))))))).))
SIMILARITIES| miRBase no hits PMRD ath-miRf10860-akr: 5e-84 microPC no hits | UniProt sp|P0C026|NUD24_ARATH: 0.000003 RFAM no hits |
Identical with: ath-miRf10860-akr from PMRD (MNEST047960) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
