ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11158-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATCGACACCCTGTTGGTGTCGGTC miRNA* TCGACACCCAGCTGTGTCGGTCGA mismatches: 1 bulges: 3 |
pre-miRNA
GGTGTCGATCGACACCCTGTTGGTGTCGGTCGACACTGTCGCGTTCTGTAGTGTCTGTCGTGGCTGGTGTCGATCGACACCCAGCTGTGTCGGTCGACAC
T
dot-bracket secondary structure
(((((((((((((((...(((((((((((((((((((((((((....(......)...)))))).)))))))))))))).))))).))))))))))))))
)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GGTGTCGATCGACACCCTGTTGGTGTCGGTCGACACTGTCGCGTTCTGTAGTGTCTGTCGTGGCTGGTGTCGATCGACACCCAGCTGTGTCGGTCGACAC
T
dot-bracket secondary structure
(((((((((((((((...(((((((((((((((((((((((((....(......)...)))))).)))))))))))))).))))).))))))))))))))
)
SIMILARITIES| miRBase ath-MIR855: 0.000005 PMRD ath-miRf11157-akr: 3e-44 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf11157-akr from PMRD (MNEST048257) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
