ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11163-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTACTCGACCAGGGGGTCGAGTG miRNA* CTCGACCTCGTGGTCGAGTGGTTT mismatches: 2 bulges: 0 |
pre-miRNA
GTCCCCTACTCGACCAGGGGGTCGAGTGGTCTGTTGAGGTCTTGAAGCTTCTACTCGACCTCGTGGTCGAGTGGTTTGAC
dot-bracket secondary structure
(((..(((((((((((.((((((((((((...(((..........)))..)))))))))))).)))))))))))...)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GTCCCCTACTCGACCAGGGGGTCGAGTGGTCTGTTGAGGTCTTGAAGCTTCTACTCGACCTCGTGGTCGAGTGGTTTGAC
dot-bracket secondary structure
(((..(((((((((((.((((((((((((...(((..........)))..)))))))))))).)))))))))))...)))
SIMILARITIES| miRBase no hits PMRD ath-miRf11162-akr: 4e-40 microPC no hits | UniProt no hits RFAM MIR854: 0.000004 |
Identical with: ath-miRf10868-akr from PMRD (MNEST047968) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
